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Recombinant AAV vectors are purified via ultracentrifugation to achieve high purity and consistency, making them suitable for in vivo applications. Vector genome titers are quantified using two complementary qPCR chemistries—probe-based and SYBR Green–based—both calibrated with ATCC reference materials to ensure accurate titer normalization and batch-to-batch reproducibility. To support in vivo–grade production, endotoxin levels are measured using the Limulus Amebocyte Lysate (LAL) assay, meeting stringent safety specifications. Optional advanced analyses include Mycoplasma testing and empty/full capsid quantification using a Refeyn mass photometer, providing comprehensive characterization of vector composition and overall product quality.
Comprehensive Quality Controls Performed
| Test Category | Assay / Method | Specification / Acceptance Criteria | Included in the Standard Service? |
| 1. Viral plasmid characterization | WPS via NanoPore platform | AAV cis, capsid, and helper plasmids must match the intended design sequences | Yes |
| 2. Physical Titer | qPCR / ddPCR (targeting ITR) | > 1.0 × 10¹³ VG/mL (Viral Genomes/mL) | Yes |
| 3. Purity & Identity | SDS-PAGE with Silver Staining | Major bands correspond to VP1 (87kDa), VP2 (72kDa), VP3 (62kDa). > 95% Purity | Yes |
| Coomassie Blue Staining | Clear separation of capsid proteins; no significant contaminating bands | Yes | |
| Western Blot | Positive identification using anti-AAV capsid antibodies | Optional with a fee | |
| 4. Packaging Efficiency | Ryfen Mass Photometer | Analysis of full vs. empty capsids (Target: High percentage of full capsids) | Optional with a fee |
| 5. Safety & Contaminants | Sterility Test (Direct Inoculation) | No growth observed after 14 days (Bacteria/Fungi) | Yes |
| Mycoplasma (PCR / Culture) | Negative / Not Detected | Yes | |
| Endotoxin (LAL Chromogenic Assay) | < 0.1 EU/mL (Endotoxin Units), ensuring in vivo safety | Yes | |
| Replication-Competent AAV (rcAAV) | < 1 rcAAV per 10⁹ VG (Assessed via qPCR targeting rep/cap genes) | Optional with a fee | |
| Host Cell Protein (HCP) | Below detectable limits (ELISA specific to HEK293T) | Optional with a fee | |
| 6. Genome integrity | Alkaline genome integrity gel | Ensure to match the AAV genome size provided by the customer | Optional with a fee |
| 7. Functional Potency | In Vitro Transduction Assay | Expression Verified (e.g., GFP fluorescence or Luciferase activity in test cell line > 80%) | Optional with a fee |
| 8. Aggregation | Dynamic Light Scattering (DLS) | Monodisperse peak (approx. 25 nm); No significant aggregation | Optional with a fee |