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Common promoters for eukaryotes and prokaryotes

Eukaryotic Promoters

  Promoter Primarily used for RNA     transcript Description Expression Additional considerations
CMV General expression mRNA Stong mammalian expression promoter from the human cytomegalovirus Constitutive May contain an enhancer region. Can be silenced in some cell types.
EF1a General expression mRNA Stong mammalian expression from human elongation factor 1 alpha Constitutive Tends to give consistent expression regardless of cell type or physiology.
SV40 General expression mRNA Mammalian expression promoter from the simian vacuolating virus 40 Constitutive May include an enhancer.
PGK1 (human or mouse) General expression mRNA Mammalian promoter from phosphoglycerate kinase gene. Constitutive Widespread expression, but may vary by cell type. Tends to resist promoter down regulation due to methylation or deacetylation.
Ubc General expression mRNA Mammalian promoter from the human ubiquitin C gene Constitutive As the name implies, this promoter is ubiquitous.
human beta actin General expression mRNA Mammalian promoter from beta actin gene Constitutive Ubiquitous. Chicken version is commonly used in promoter hybrids.
CAG General expression mRNA Strong hybrid mammalian promoter Constitutive Contains CMV enhancer, chicken beta actin promoter, and rabbit beta-globin splice acceptor.
TRE General expression mRNA Tetracycline response element promoter Inducible with Tetracyline or its derivatives. Typically contains a minimal promoter with low basal activity and several tetracycline operators. Transcription can be turned on or off depending on what tet transactivator is used.
UAS General expression mRNA Drosophila promoter conaining Gal4 binding sites Specific Requires the presence of Gal4 gene to activate promoter.
Ac5 General expression mRNA Strong insect promoter from Drosophila Actin 5c gene Constitutive Commonly used in expression systems for Drosophila.
Polyhedrin General expression mRNA Strong insect promoter from baculovirus Constitutive Commonly used in expression systems for insect cells.
CaMKIIa Gene expression for optogenetics mRNA Ca2+/calmodulin-dependent protein kinase II promoter Specific Used for neuronal/CNS expression. Modulated by calcium and calmodulin.
GAL1, 10 General expression mRNA Yeast adjacent, divergently transcribed promoters Inducible with galactose; repressible with glucose Can be used independently or together. Regulated by GAL4 and GAL 80.
TEF1 General expression mRNA Yeast transcription elongation factor promoter Constitutive Analogous to mammalian EF1a promoter.
GDS General expression mRNA Strong yeast expression promoter from glyceraldehyde 3-phosphage dehydrogenase Constitutive Very strong, also called TDH3 or GAPDH.
ADH1 General expression mRNA Yeast promoter for alcohol dehydrogenase I Repressed by ethanol Full length version is strong with high expression. Truncated promoters are constitutive with lower expression.
CaMV35S General expression mRNA Strong plant promoter from the Cauliflower Mosaic Virus Constitutive Active in dicots, less active in monocots, with some activity in animal cells.
Ubi General expression mRNA Plant promoter from maize ubiquitin gene Constitutive Gives high expression in plants.
H1 small RNA expression shRNA From the human polymerase III RNA promoter Constitutive May have slightly lower expression than U6. May have better expression in neuronal cells.
U6 small RNA expression shRNA From the human U6 small nuclear promoter Constitutive Murine U6 is also used, but may be less efficient.

Prokaryotic promoters

    Promoter Primarily used for Description Expression Additional considerations
T7 in vitro transcription/ general expression Promoter from T7 bacteriophage Constitutive, but requires T7 RNA polymerase. When used for in vitro transcription, the promoter drives either the sense OR antisense transcript depending on its orientation to your gene.
T7lac High levels of gene expression Promoter from T7 bacteriophage plus lac operators Negligible basal expression when not induced. Requires T7 RNA polymerase, which is also controlled by lac operator. Can be induced by IPTG. Commonly found in pET vectors. Very tightly regulated by the lac operators. Good for modulating gene expression through varied inducer concentrations.
Sp6 in vitro transcription/ general expression Promoter from Sp6 bacteriophage Constitutive, but requires SP6 RNA polymerase. SP6 polymerase has a high processivity. When used for in vitro transcription, the promoter drives either the sense OR antisense transcript depending on its orientation to your gene.
araBAD General expression Promoter of the arabinose metabolic operon Inducible by arabinose and repressed catabolite repression in the presence of glucose or by competitive binding of the anti-inducer fucose Weaker. Commonly found in pBAD vectors. Good for rapid regulation and low basal expression; however, not well-suited for modulating gene expression through varied inducer concentrations.
trp High levels of gene expression Promoter from E. coli tryptophan operon Repressible Gets turned off with high levels of cellular tryptophan.
lac General expression Promoter from lac operon Constitutive in the absense of lac repressor (lacI or lacIq). Can be induced by IPTG or lactose. Leaky promoter with somewhat weak expression. lacIq mutation increases expression of the repressor 10x, thus tightening regulation of lac promoter. Good for modulating gene expression through varied inducer concentrations.
Ptac General expression Hybrid promoter of lac and trp Regulated like the lac promoter Contains -35 region from trpB and -10 region from lac. Very tight regulation. Good for modulating gene expression through varied inducer concentrations. Generally better expression than lac alone.
pL High levels of gene expression Promoter from bacteriophage lambda Can be temperature regulatable Often paired with the temperature sensitive cI857 repressor.

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